2007 Publications

Feng, M., Majewski, L.J., Fandry, C.B. and Waite, A.M. (2007)
Characteristics of two counter-rotating eddies in the Leeuwin Current system off the Western Australian coast.
Deep Sea Research II-Topical Studies in Oceanography 54(8-10): 961-980.

Gale, E.J., Pattiaratchi, C.B. and Ranasinghe, R. (2007)
Processes driving circulation, exchange and flushing within Intermittently closed and opening lakes and lagoons.
Marine and Freshwater Research 58(8): 709-719.

Greenwood, J.E., Feng, M. and Waite, A.M. (2007)
A one-dimensional simulation of biological production in two contrasting mesoscale eddies in the south eastern Indian Ocean.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 1029-1054.

Hanson, C.E., Pesant, S., Waite, A.M. and Pattiaratchi, C.B. (2007)
Assessing the magnitude and significance of deep chlorophyll maxima of the coastal eastern Indian Ocean.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 884-901.

Hanson, C.E., Waite, A.M., Thompson, P.A. and Pattiaratchi, C.B. (2007)
Phytoplankton community structure and nitrogen nutrition in Leeuwin Current and coastal waters off the Gascoyne region of Western Australia.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 902-927.

Holl, C.M., Waite, A.M., Pesant, S., Thompson, P.A. and Montoya, J.P. (2007)
Unicellular diazotrophy as a source of nitrogen to Leeuwin Current coastal eddies .
Deep Sea Research II-Topical Studies in Oceanography 54 (8-10): 1045-1054.

Harper, R.J., Beck, A.C., Ritson, P., Hill, M.J., Mitchell, C.D., Barrett, D.J., Smettem, K.R.J., and Mann, S.S. (2007)
The potential of greenhouse sinks to underwrite improved land management.
Ecological Engineering 29: 329-341.

Harper, R.J., Smettem, K.R.J., McGrath, J.F. and Bartle, J.R. (2007)
Broad-scale restoration of landscape function with timber, carbon and bioenergy investment.
Proceedings of the IUFRO Conference on Forest Landscape Restoration, Seoul, South Korea, 14-19 May 2007. Korea Forest Research Institute, Seoul. Stanturf, J. (editor) 132-135.

Jandaghi Alaee, M., Pattiaratchi, C.B. and Ivey, G.N. (2007) Numerical simulation of the summer wake of Rottnest Island, Western Australia.
Dynamics of Atmospheres and Oceans 43: 171-198.

Kusumastuti, D.I., Struthers, I. Sivapalan, M. and Reynolds, D.A. (2007)
Threshold effects in catchment storm response and the occurrence and magnitude of flood events: implications for flood frequency.
Hydrology and Earth System Sciences 11: 1515-1528.

Lowe, R.J., Falter, J.L., Koseff, J.R., Monismith, S.G. and Atkinson, M.J. (2007)
Spectral wave flow attenuation within submerged canopies: Implications for wave energy dissipation.
Journal of Geophysical Research 112: C05018, doi: 10.1029/2006JC003605.

Maas, E.W., Latter, R.M., Thiele, J., Waite, A.M. and Brooks, H.J.L. (2007)
Effect of multiple antibiotic treatments on a paralytic shellfish toxin-producing culture of the dinoflagellate Alexandrium minutem from Anakoha Bay, New Zealand.
Aquatic Microbial Ecology 48: 255-260.

Meuleners, M., Pattiaratchi, C.B. and Ivey, G.N. (2007)
Numerical modelling of the mean flow characteristics of the Leeuwin Current system.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 837-858.

Murphy, E., Ghisalberti, M. and Nepf, H.M. (2007)
Model and laboratory study of dispersion in flows with submerged vegetation.
Water Resources Research 43, W05438, doi:10.1029/2006WR005229.

Nepf, H., Ghisalberti, M., White, B. and Murphy, E. (2007)
Retention time and dispersion associated with submerged aquatic canopies.
Water Resources Research 43, W04422, doi:10.1029/2006WR005362.

Oberhaus, L., GeLinas, M., Pinel-Alloul, B., Ghadouani, A. and Humbert, J-F, (2007)
Grazing of two toxic Planktothrix species by Daphnia pulicaria: potential for bloom control and transfer of microcystins.
Journal of Plankton Research 29(10): 827-838.

O'Callaghan, J., Pattiaratchi, C.B. and Hamilton, D. (2007)
The response of circulation and salinity in a micro-tidal estuary to sub-tidal oscillations in coastal sea surface elevation.
Continental Shelf Research, 27(14), 1947-1965.

Paterson, H., Knott, B. and Waite, A. (2007)
Microzooplankton community structure and grazing on phytoplankton, in an eddy pair in the Indian Ocean off Western Australia.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 1076-1093.

Paterson, H., Pesant, S., Clode, P., Knott, B. and Waite, A. (2007)
Systematics of a rare radiolarian-Coelodiceras spinosum Haecker (Sarcodina: Actinopoda: Phaeodaria: Coelodendridae).
Deep Sea Research II-Topical Studies in Oceanography 54(8-10): 1094-1102.

Pinel-Alloul, B. and Ghadouani, A. (2007)
Spatial heterogeneity of planktonic microoraganisms in aquatic systems: mutiscale patterns and processes.
In: The Spatial Distribution of Microbes in the Environment. R. Franklin and A. Mills(Editors). Springer - ISBN: 978-1-4020-6215-5 203-307.

Rennie, S., McCauley, R. and Pattiaratchi, C.B. (2007)
Eddy formation through the interaction between the Leeuwin Current, Leeuwin Undercurrent and topography.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 818-836.

Ryan, D.A., Brooke B.P., Collins, L.B., Kendrick, G.A., Baxter, K.J., Bickers, A.N., Siwabessy, P.J.W. and Pattiaratchi, C.B. (2007)
The influence of geomorphology and sedimentary processes on shallow-water benthic habitat distribution: Esperance Bay, Western Australia.
Estuarine and Coastal Shelf Science 72: 379-386.

Schymanski, S.J., Roderick, M.L., Sivapalan, M., Hutley, L.B. and Beringer, J. (2007)
A test of the optimality approach to modelling canopy properties and CO2 uptake by natural vegetation.
Plant, Cell and Environment 30(12): 1586-1598.

Smith, R.E.H., Parrish, C.C., Depew, D.C. and Ghadouani, A. (2007)
Spatial patterns of seston concentration and biochemical composition between nearshore and offshore waters of a Great Lake.
Freshwater Biology 52: 2196-2210.

Smettem, K.R.J. and Pracilio, G. (2007)
Mapping soil properties for catchment-scale hydrologic models using high resolution gamma radiometrics.
Journal of Arid Land Studies 16: 157-159.

Son, K. and Sivapalan, M. (2007)
Improving model structure and reducing parameter uncertainty in conceptual water balance models through the use of auxiliary data.
Water Resources Research 43: W01415, doi:10.1029/2006WR005032.

Sochacki, S.J., Harper, R.J. and Smettem, K.R.J. (2007)
Estimation of woody biomass production from a short-rotation bio-energy system in semi-arid Australia.
Biomass and Bioenergy 31(9): 608-616.

Struthers, I., Sivapalan, M. and Hinz, C. (2007)
Conceptual examination of climate-soil controls upon rainfall partitioning in an open-fractured soil. I. Single storm response.
Advances in Water Resources 30(3): 505-517.

Struthers, I., Sivapalan, M. and Hinz, C. (2007)
Conceptual examination of climate-soil controls upon rainfall partitioning in an open-fractured soil. II. Response to a population of storms.
Advances in Water Resources 30(3): 505-517.

Struthers, I.M. and Sivapalan, M. (2007)
A conceptual investigation of process controls upon flood frequency: Role of thresholds.
Hydrology and Earth System Sciences (HESS) 11: 1405-1416.

Strzelecki, J., Koslow, J.A. and Waite, A. (2007)
Comparison of mesozooplankton communities from a pair of warm- and cold-core eddies off the coast of Western Australia.
Deep Sea Research II-Topical Studies in Oceanography 54 (8-10): 1103-1112.

Suthers, I.M. and Waite, A.M. (2007)
Coastal oceanography and ecology.
In Marine Ecology, published by Oxford University Press. Sean D. Connell and Bronwyn M. Gillanders (editors) chapter 9: 199-226.

Thompson, P.A., Pesant, S. and Waite, A.M. (2007)
Contrasting the vertical differences in the phytoplankton biology of a dipole pair of eddies in the south-eastern Indian Ocean.
Deep Sea Research II-Topical Studies in Oceanography 54(8-10): 1003-1028.

Twomey, L.J., Waite, A.M., Pez, V. and Pattiaratchi, C.B. (2007)
Variability in nitrogen uptake and fixation in the oligotrophic waters off the south west coast of Australia.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 925-942.

Waite, A.M. and Suthers, I.M. (2007)
Open water: plankton ecology.
In Marine Ecology, published by Oxford University Press. Sean D. Connell and Bronwyn M. Gillanders (editors) Chapter 12: 281-312.

Waite, A.M., Muhling, B.A., Holl, C.M., Beckley, L.E., Montoya, J.P., Strzelecki, J., Thompson, P.A. and Pesant, S. (2007)
Food web structure in two counter-rotating eddies based on isotopic analyses.
Deep Sea Research II-Topical Studies in Oceanography 54 (8-10): 1055-1075.

Waite, A.M., Pesant, S., Griffin, D.A., Thompson, P.A. and Holl, C.M. (2007)
Oceanography, primary production and dissolved inorganic nitrogen uptake in two Leeuwin Current eddies.
Deep Sea Research Part II: Topical Studies in Oceanography 54(8-10): 981-1002.

Waite, A.M., Thompson, P.A., Pesant, S., Feng, M., Beckley, L.E., Domingues, C.M., Gaughan, D., Hanson, C.E., Holl, C.M., Koslow, T., Meuleners, M., Montoya, J.P., Moore, T., Muhling, B.A., Paterson, H., Rennie, S., Strzelecki, J. and Twomey, L. (2007)
The Leeuwin Current and its eddies: An introductory overview.
Deep Sea Research II-Topical Studies in Oceanography 54(8-10): 789-796.

Wake, G.W., Hopfinger, E.J. and Ivey, G.N. (2007)
Experimental study on resonantly forced interfacial waves in a stratified circular cylindrical basin.
Journal of Fluid Mechanics 582: 203-222.

Zaker, N.H., Imberger, J. and Pattiaratchi, C.B. (2007)
Dynamics of the coastal boundary layer off Perth, Western Australia.
Journal of Coastal Research 23(5): 112-1130.